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The advantage is that it separates the dependencies of the different tools better. golangci-lint in particular has many dependencies and is sometimes sensitive to the exact version being used. This way, "go get" bumps up dependencies exactly as defined by the upstream golangci-lint module. It's not quite self-contained because logcheck as a Go plugin for golangci-lint must be built from the same dependencies. But it only adds one and does not change any of the others. While at it, the Go 1.24 "tools" directive gets used instead of the traditional tools.go approach.
This directory contains a stub go module used to track version of development tools like the ones needed for linting go sources.