diff --git a/enterprise/app/controllers/api/v1/accounts/captain/assistants_controller.rb b/enterprise/app/controllers/api/v1/accounts/captain/assistants_controller.rb
index 21675bad0..ebeaaf67f 100644
--- a/enterprise/app/controllers/api/v1/accounts/captain/assistants_controller.rb
+++ b/enterprise/app/controllers/api/v1/accounts/captain/assistants_controller.rb
@@ -33,7 +33,8 @@ class Api::V1::Accounts::Captain::AssistantsController < Api::V1::Accounts::Base
   end
 
   def tools
-    @tools = Captain::Assistant.available_agent_tools
+    assistant = Captain::Assistant.new(account: Current.account)
+    @tools = assistant.available_agent_tools
   end
 
   private
diff --git a/enterprise/app/models/captain/assistant.rb b/enterprise/app/models/captain/assistant.rb
index 0423abf67..3ee5f617c 100644
--- a/enterprise/app/models/captain/assistant.rb
+++ b/enterprise/app/models/captain/assistant.rb
@@ -50,6 +50,21 @@ class Captain::Assistant < ApplicationRecord
     name
   end
 
+  def available_agent_tools
+    tools = self.class.built_in_agent_tools.dup
+
+    if account.feature_enabled?(:captain_custom_tools)
+      custom_tools = Captain::CustomTool.where(account_id: account_id, enabled: true).map(&:to_tool_metadata)
+      tools.concat(custom_tools)
+    end
+
+    tools
+  end
+
+  def available_tool_ids
+    available_agent_tools.pluck(:id)
+  end
+
   def push_event_data
     {
       id: id,
diff --git a/enterprise/app/models/concerns/captain_tools_helpers.rb b/enterprise/app/models/concerns/captain_tools_helpers.rb
index 5a660310c..34133aac2 100644
--- a/enterprise/app/models/concerns/captain_tools_helpers.rb
+++ b/enterprise/app/models/concerns/captain_tools_helpers.rb
@@ -8,12 +8,12 @@ module Concerns::CaptainToolsHelpers
   TOOL_REFERENCE_REGEX = %r{\[[^\]]+\]\(tool://([^/)]+)\)}
 
   class_methods do
-    # Returns all available agent tools with their metadata.
+    # Returns all built-in agent tools with their metadata.
     # Only includes tools that have corresponding class files and can be resolved.
     #
     # @return [Array<Hash>] Array of tool hashes with :id, :title, :description, :icon
-    def available_agent_tools
-      @available_agent_tools ||= load_agent_tools
+    def built_in_agent_tools
+      @built_in_agent_tools ||= load_agent_tools
     end
 
     # Resolves a tool class from a tool ID.
@@ -26,12 +26,12 @@ module Concerns::CaptainToolsHelpers
       class_name.safe_constantize
     end
 
-    # Returns an array of all available tool IDs.
-    # Convenience method that extracts just the IDs from available_agent_tools.
+    # Returns an array of all built-in tool IDs.
+    # Convenience method that extracts just the IDs from built_in_agent_tools.
     #
-    # @return [Array<String>] Array of available tool IDs
-    def available_tool_ids
-      @available_tool_ids ||= available_agent_tools.map { |tool| tool[:id] }
+    # @return [Array<String>] Array of built-in tool IDs
+    def built_in_tool_ids
+      @built_in_tool_ids ||= built_in_agent_tools.map { |tool| tool[:id] }
     end
 
     private